Transcript: SMC5-AS1:2

Basic information

LNCipedia transcript ID: SMC5-AS1:2 
HGNC Gene Symbol: SMC5-AS1    
HGNC Full Gene Name: SMC5 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000268364
Ensembl Transcript ID: ENST00000594708
Location (hg38): chr9:70193997-70258866
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1818 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT131806; ENST00000594708.1
Alternative gene names: ENSG00000268364.1; SMC5-AS1; MAMDC2-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.3742 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMC5-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLF9-3:2
4.0 SMC5-AS1:2
4.1 SMC5-AS1:2
5.0 SMC5-AS1:2
5.1 SMC5-AS1:2
5.2 SMC5-AS1:2