Transcript: THAP9-AS1:8

Basic information

LNCipedia transcript ID: THAP9-AS1:8 
HGNC Gene Symbol: THAP9-AS1    
HGNC Full Gene Name: THAP9 antisense RNA 1
Ensembl Gene ID: ENSG00000251022
Ensembl Transcript ID: ENST00000513581
Location (hg38): chr4:82897763-82900569
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 683 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513581.1; RP11-163O17.1-005; OTTHUMT00000361935.1; NONHSAT097191; ENST00000513581.5
Alternative gene names: ENSG00000251022.1; RP11-163O17.1; OTTHUMG00000160729.1; ENSG00000251022.2; THAP9-AS1; ENSG00000251022.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.5927 non-coding 
CPAT coding probability 3.41% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.12
seqAAMRSREAGPKLRRIQEPANGSPGAVSETGGYREERLSDAEIMGKLLAWLAVGM
orfFrame6.584826288

In stringent set: no

Locus conservation

Locus conservation?
THAP9-AS1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIN54-1:4
4.0 THAP9-AS1:8
4.1 THAP9-AS1:8
5.0 THAP9-AS1:8
5.1 THAP9-AS1:8
5.2 THAP9-AS1:8