Transcript: ZBED3-AS1:1

Basic information

LNCipedia transcript ID: ZBED3-AS1:1 
LNCipedia gene ID: ZBED3-AS1
Location (hg38): chr5:77086740-77147956
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 805 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000503969.1; CTC-564N23.3-006; OTTHUMT00000369067.2; ENST00000503969.5
Alternative gene names: ENSG00000250802.2; CTC-564N23.3; OTTHUMG00000162473.3; ZBED3-AS1; ENSG00000250802.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.2642 non-coding 
CPAT coding probability 13.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZBED3-AS1:1 no no no no

Available literature

  1. Wang (2015), Long noncoding RNAs expression signatures in chondrogenic differentiation of human bone marrow mesenchymal stem cells., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGGF1-3:1
4.0 ZBED3-AS1:1
4.1 ZBED3-AS1:1
5.0 ZBED3-AS1:1
5.1 ZBED3-AS1:1
5.2 ZBED3-AS1:1