Transcript: ZBED3-AS1:11

Basic information

LNCipedia transcript ID: ZBED3-AS1:11 
HGNC Gene Symbol: ZBED3-AS1    
HGNC Full Gene Name: ZBED3 antisense RNA 1
Ensembl Gene ID: ENSG00000250802
Ensembl Transcript ID: ENST00000514114
Location (hg38): chr5:77087463-77151391
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 527 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514114.1; CTC-564N23.3-018; OTTHUMT00000369079.2; NONHSAT102270; ENST00000514114.5
Alternative gene names: ENSG00000250802.2; CTC-564N23.3; OTTHUMG00000162473.3; ZBED3-AS1; ENSG00000250802.6; ; ENSG00000250802.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.4039 non-coding 
CPAT coding probability 13.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZBED3-AS1:11 no no no no

Available literature

  1. Wang (2015), Long noncoding RNAs expression signatures in chondrogenic differentiation of human bone marrow mesenchymal stem cells., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGGF1-3:9
4.0 ZBED3-AS1:11
4.1 ZBED3-AS1:11
5.0 ZBED3-AS1:11
5.1 ZBED3-AS1:11
5.2 ZBED3-AS1:11