Transcript: lnc-REXO5-1:2

Basic information

LNCipedia transcript ID: lnc-REXO5-1:2 
LNCipedia gene ID: lnc-REXO5-1
Location (hg38): chr16:20674531-20682174
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3309 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000501740; NONHSAT140939
Alternative gene names: ENSG00000246328; AC020926.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.758 non-coding 
CPAT coding probability 20.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-REXO5-1:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC004381.6.1-1:1
3.1 lnc-AC004381.6.1-1:1
4.0 lnc-AC004381.6.1-1:1
4.1 lnc-AC004381.6.1-1:1
5.0 lnc-AC004381.6.1-1:1
5.1 lnc-TMC5-26:2
5.2 lnc-REXO5-1:2