Transcript: lnc-ACTL7B-3:1

Basic information

LNCipedia transcript ID: lnc-ACTL7B-3:1 
LNCipedia gene ID: lnc-ACTL7B-3
Ensembl Gene ID: ENSG00000230030
Ensembl Transcript ID: ENST00000453455
Location (hg38): chr9:108252154-108254820
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 224 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015868; ENST00000453455; ENST00000453455.1; RP11-505C13.1-001; OTTHUMT00000053566.1; NONHSAT133910
Alternative gene names: XLOC_007826; linc-KLF4-3; ENSG00000230030; RP11-505C13.1; ENSG00000230030.1; OTTHUMG00000020457.1; AL353742.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -292.3145 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTL7B-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL162389.1-2:1
3.1 lnc-AL162389.1-2:1
4.0 lnc-AL162389.1-2:1
4.1 lnc-AL162389.1-2:1
5.0 lnc-AL162389.1-2:1
5.1 lnc-SLC46A2-69:1
5.2 lnc-ACTL7B-3:1