Transcript: lnc-ACTR2-3:11

Basic information

LNCipedia transcript ID: lnc-ACTR2-3:11 
LNCipedia gene ID: lnc-ACTR2-3
Location (hg38): chr2:65436711-66072617
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1113 bp
Exons: 10
Sources: NONCODE v4
Alternative transcript names: NONHSAT071173
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.422 non-coding 
CPAT coding probability 25.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTR2-3:11 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACTR2-2:3
4.0 lnc-ACTR2-3:11
4.1 lnc-ACTR2-3:11
5.0 lnc-ACTR2-3:11
5.1 lnc-AFTPH-40:12
5.2 lnc-ACTR2-3:11