Transcript: lnc-ACTR2-3:36

Basic information

LNCipedia transcript ID: lnc-ACTR2-3:36 
LNCipedia gene ID: lnc-ACTR2-3
Ensembl Gene ID: ENSG00000281920
Ensembl Transcript ID: ENST00000629214
Location (hg38): chr2:65623272-65628424
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 744 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629214.1
Alternative gene names: ENSG00000281920.1; RP11-418H16.1; AC007389.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -30.8477 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTR2-3:36 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ACTR2-12:1
4.1 lnc-ACTR2-3:36
5.0 lnc-ACTR2-3:36
5.1 lnc-AFTPH-40:19
5.2 lnc-ACTR2-3:36