Transcript: lnc-ACTR2-3:9

Basic information

LNCipedia transcript ID: lnc-ACTR2-3:9 
LNCipedia gene ID: lnc-ACTR2-3
Ensembl Gene ID: ENSG00000204929
Ensembl Transcript ID: ENST00000441506
Location (hg38): chr2:65732893-65754911
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 488 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441506; TCONS_00002914; ENST00000441506.1; AC074391.1-007; OTTHUMT00000327986.2; NONHSAT071201
Alternative gene names: ENSG00000204929; XLOC_001504; linc-MEIS1-4; AC074391.1; ENSG00000204929.6; OTTHUMG00000152768.5; ENSG00000204929.7; ENSG00000204929.11; ENSG00000204929.12; AC007389.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.3088 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTR2-3:9 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACTR2-3:9
3.1 lnc-ACTR2-3:9
4.0 lnc-ACTR2-3:9
4.1 lnc-ACTR2-3:9
5.0 lnc-ACTR2-3:9
5.1 lnc-AFTPH-40:30
5.2 lnc-ACTR2-3:9