Transcript: lnc-ADAM22-2:6

Basic information

LNCipedia transcript ID: lnc-ADAM22-2:6 
LNCipedia gene ID: lnc-ADAM22-2
Ensembl Gene ID: ENSG00000228113
Ensembl Transcript ID: ENST00000628577
Location (hg38): chr7:88231673-88292260
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 676 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000628577.2
Alternative gene names: ENSG00000228113.7; AC003991.3; AC003991.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -40.4063 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAM22-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ADAM22-2:6
4.1 lnc-ADAM22-2:6
5.0 lnc-ADAM22-2:6
5.1 lnc-LAMTOR4-138:11
5.2 lnc-ADAM22-2:6