Transcript: lnc-ADAM22-2:7

Basic information

LNCipedia transcript ID: lnc-ADAM22-2:7 
LNCipedia gene ID: lnc-ADAM22-2
Ensembl Gene ID: ENSG00000228113
Ensembl Transcript ID: ENST00000447758
Location (hg38): chr7:88232011-88292460
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 625 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447758.1; AC003991.3-002; OTTHUMT00000339326.1; NONHSAT121866
Alternative gene names: ENSG00000228113.1; AC003991.3; OTTHUMG00000153895.3; ENSG00000228113.3; ENSG00000228113.7; AC003991.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.8577 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAM22-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAM22-3:1
4.0 lnc-ADAM22-2:7
4.1 lnc-ADAM22-2:7
5.0 lnc-ADAM22-2:7
5.1 lnc-LAMTOR4-138:12
5.2 lnc-ADAM22-2:7