Transcript: lnc-ADAMTSL4-1:2

Basic information

LNCipedia transcript ID: lnc-ADAMTSL4-1:2 
LNCipedia gene ID: lnc-ADAMTSL4-1
Location (hg38): chr1:150532657-150537163
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1627 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00002162
Alternative gene names: XLOC_000403; linc-ADAMTSL4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.057 non-coding 
CPAT coding probability 41.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ADAMTSL4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTSL4-1:2
3.1 lnc-ADAMTSL4-1:2
4.0 lnc-ADAMTSL4-1:2
4.1 lnc-ADAMTSL4-1:2
5.0 lnc-ADAMTSL4-1:2
5.1 lnc-ADAMTSL4-1:2
5.2 lnc-ADAMTSL4-1:2