Transcript: lnc-ADCYAP1-2:4

Basic information

LNCipedia transcript ID: lnc-ADCYAP1-2:4 
LNCipedia gene ID: lnc-ADCYAP1-2
Ensembl Gene ID: ENSG00000263551
Ensembl Transcript ID: ENST00000581556
Location (hg38): chr18:1099008-1159335
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581556.1; RP11-78F17.1-003; OTTHUMT00000441528.1; NONHSAT056880
Alternative gene names: ENSG00000263551.1; RP11-78F17.1; OTTHUMG00000178322.2; ENSG00000263551.5; AP005328.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7861 non-coding 
CPAT coding probability 8.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADCYAP1-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADCYAP1-2:4
4.0 lnc-ADCYAP1-2:4
4.1 lnc-ADCYAP1-2:4
5.0 lnc-ADCYAP1-2:4
5.1 lnc-RIOK3-301:4
5.2 lnc-ADCYAP1-2:4