Transcript: lnc-ADPRM-1:1

Basic information

LNCipedia transcript ID: lnc-ADPRM-1:1 
LNCipedia gene ID: lnc-ADPRM-1
Ensembl Gene ID: ENSG00000214970
Ensembl Transcript ID: ENST00000579914
Location (hg38): chr17:10579040-10612571
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 569 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579914.1; CTC-297N7.7-005; OTTHUMT00000442367.1; NONHSAT145623
Alternative gene names: ENSG00000214970.2; CTC-297N7.7; OTTHUMG00000178041.3; ENSG00000214970.4; ENSG00000214970.8; ; AC005323.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.1656 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADPRM-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC005323.1.1-1:4
4.0 MYHAS:9
4.1 MYHAS:9
5.0 MYHAS:9
5.1 lnc-GLP2R-162:1
5.2 lnc-ADPRM-1:1