Transcript: lnc-ALDH1A3-1:11

Basic information

LNCipedia transcript ID: lnc-ALDH1A3-1:11 
LNCipedia gene ID: lnc-ALDH1A3-1
Location (hg38): chr15:100861843-100873990
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 628 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000558641.1; RP11-66B24.1-002; OTTHUMT00000416662.1; NONHSAT051136
Alternative gene names: ENSG00000259604.1; RP11-66B24.1; OTTHUMG00000172058.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -505.3598 non-coding 
CPAT coding probability 16.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALDH1A3-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALDH1A3-1:11
4.0 lnc-ALDH1A3-1:11
4.1 lnc-ALDH1A3-1:11
5.0 lnc-ALDH1A3-1:11
5.1 lnc-OR4F15-14:16
5.2 lnc-ALDH1A3-1:11