Transcript: lnc-ALDH1A3-1:13

Basic information

LNCipedia transcript ID: lnc-ALDH1A3-1:13 
LNCipedia gene ID: lnc-ALDH1A3-1
Ensembl Gene ID: ENSG00000259604
Ensembl Transcript ID: ENST00000559673
Location (hg38): chr15:100861849-100867493
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 630 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559673.1; RP11-66B24.1-003; OTTHUMT00000416663.1; NONHSAT140273
Alternative gene names: ENSG00000259604.1; RP11-66B24.1; OTTHUMG00000172058.1; ENSG00000259604.5; AC015712.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -480.9375 non-coding 
CPAT coding probability 3.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALDH1A3-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALDH1A3-1:13
4.0 lnc-ALDH1A3-1:13
4.1 lnc-ALDH1A3-1:13
5.0 lnc-ALDH1A3-1:13
5.1 lnc-OR4F15-14:19
5.2 lnc-ALDH1A3-1:13