Transcript: lnc-ALG1-3:1

Basic information

LNCipedia transcript ID: lnc-ALG1-3:1 
LNCipedia gene ID: lnc-ALG1-3
Ensembl Gene ID: ENSG00000267070
Ensembl Transcript ID: ENST00000589323
Location (hg38): chr16:5098739-5142595
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 531 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT140341; ENST00000589323.1
Alternative gene names: ENSG00000267070.1; RP11-10K17.6; AC026458.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -287.4769 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG1-3:1
4.0 lnc-ALG1-3:1
4.1 lnc-ALG1-3:1
5.0 lnc-ALG1-3:1
5.1 lnc-SMIM22-11:1
5.2 lnc-ALG1-3:1