Transcript: lnc-ANKRD1-1:1

Basic information

LNCipedia transcript ID: lnc-ANKRD1-1:1 
LNCipedia gene ID: lnc-ANKRD1-1
Location (hg38): chr10:90961076-90997748
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 363 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00018022; ENST00000455465; ENST00000455465.1; RP11-236B18.3-001; OTTHUMT00000049360.1; NONHSAT015612
Alternative gene names: XLOC_008902; linc-ANKRD1-2; ENSG00000225525; RP11-236B18.3; ENSG00000225525.1; OTTHUMG00000018737.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 5.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD1-1:1
3.1 lnc-ANKRD1-1:1
4.0 lnc-ANKRD1-1:1
4.1 lnc-ANKRD1-1:1
5.0 lnc-ANKRD1-1:1
5.1 lnc-HTR7-1:10
5.2 lnc-ANKRD1-1:1