Transcript: lnc-APBB1IP-1:3

Basic information

LNCipedia transcript ID: lnc-APBB1IP-1:3 
LNCipedia gene ID: lnc-APBB1IP-1
RefSeq ID: NR_026793
Location (hg38): chr10:26589865-26594324
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1085 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000412114; ENST00000412114.1; LINC00264-001; OTTHUMT00000047265.1; NONHSAT011837; NR_026793.1
Alternative gene names: ENSG00000233261; NCRNA00264; ENSG00000233261.1; LINC00264; OTTHUMG00000017839.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.8764 non-coding 
CPAT coding probability 2.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APBB1IP-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APBB1IP-1:3
3.1 lnc-APBB1IP-1:3
4.0 lnc-APBB1IP-1:3
4.1 lnc-APBB1IP-1:3
5.0 lnc-APBB1IP-1:3
5.1 lnc-NPY4R2-256:5
5.2 lnc-APBB1IP-1:3