Transcript: lnc-ARL6IP4-3:1

Basic information

LNCipedia transcript ID: lnc-ARL6IP4-3:1 ?
LNCipedia gene ID: lnc-ARL6IP4-3
Location (hg19): chr12:123565931-123569291
Strand: +
Class: antisense
Transcript size: 2191 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000506255; ENST00000506255.1; RP11-197N18.7-001; OTTHUMT00000401350.1; NONHSAT031561; NR_038290
Alternative gene names: ENSG00000251497; RP11-197N18.7; ENSG00000251497.2; OTTHUMG00000168847.1


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding ?
Peptide Confidence
KSALIAAGARNISAK 99.4750656167979%
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -88.3232 non-coding ?
CPAT coding probability 1.81% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
lnc-ARL6IP4-3:1 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -861.82
Randfold P-value: 0.001

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-4726-5p 80.38
hsa-miR-1915-3p 78.45
hsa-miR-4322 76.92
hsa-miR-4265 75.90
hsa-miR-4640-5p 75.31
hsa-miR-4296 70.93
hsa-miR-4686 67.66
hsa-miR-5706 62.75
hsa-miR-4782-5p 59.50
hsa-miR-548q 57.99
hsa-miR-3692-5p 57.94
hsa-miR-548p 55.15
hsa-miR-3612 55.03
hsa-miR-650 53.62
hsa-miR-545-3p 53.17
hsa-miR-1324 53.14
hsa-miR-370 53.11
hsa-miR-1182 52.58
hsa-miR-516b-5p 51.45
hsa-miR-4460 50.00

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-ARL6IP4-1:1
4.0 lnc-ARL6IP4-3:1
3.1 lnc-ARL6IP4-1:1