Transcript: lnc-ASB13-2:1

Basic information

LNCipedia transcript ID: lnc-ASB13-2:1 
LNCipedia gene ID: lnc-ASB13-2
Ensembl Gene ID: ENSG00000231483
Ensembl Transcript ID: ENST00000425246
Location (hg38): chr10:5608475-5610793
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 613 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017913; ENST00000425246; ENST00000425246.1; RP11-336A10.5-001; OTTHUMT00000046558.1; NONHSAT011165
Alternative gene names: XLOC_008712; linc-CALML5-7; ENSG00000231483; RP11-336A10.5; ENSG00000231483.1; OTTHUMG00000017600.1; AL365356.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.5364 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASB13-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASB13-2:1
3.1 lnc-ASB13-2:1
4.0 lnc-ASB13-2:1
4.1 lnc-ASB13-2:1
5.0 lnc-ASB13-2:1
5.1 lnc-KLF6-55:1
5.2 lnc-ASB13-2:1