Transcript: lnc-BCL11A-1:1

Basic information

LNCipedia transcript ID: lnc-BCL11A-1:1 
LNCipedia gene ID: lnc-BCL11A-1
Location (hg38): chr2:60439393-60439770
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 252 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00004267
Alternative gene names: XLOC_002109; linc-FANCL-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 29.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCL11A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCL11A-1:1
3.1 lnc-BCL11A-1:1
4.0 lnc-BCL11A-1:1
4.1 lnc-BCL11A-1:1
5.0 lnc-BCL11A-1:1
5.1 lnc-PPP4R3B-75:2
5.2 lnc-BCL11A-1:1