Transcript: lnc-BCL11A-5:1

Basic information

LNCipedia transcript ID: lnc-BCL11A-5:1 
LNCipedia gene ID: lnc-BCL11A-5
Location (hg38): chr2:60339614-60340479
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 409 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004264; NONHSAT070889
Alternative gene names: XLOC_002105; linc-FANCL-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.4667 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCL11A-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCL11A-5:1
3.1 lnc-BCL11A-5:1
4.0 lnc-BCL11A-5:1
4.1 lnc-BCL11A-5:1
5.0 lnc-BCL11A-5:1
5.1 lnc-PPP4R3B-72:1
5.2 lnc-BCL11A-5:1