Transcript: lnc-BRF2-6:1

Basic information

LNCipedia transcript ID: lnc-BRF2-6:1 
LNCipedia gene ID: lnc-BRF2-6
Ensembl Gene ID: ENSG00000254306
Ensembl Transcript ID: ENST00000517714
Location (hg38): chr8:37600537-37625873
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 551 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517714; ENST00000517714.1; RP11-150O12.4-001; OTTHUMT00000376681.1; NONHSAT126053; FPKM1_group_31195_transcript_1
Alternative gene names: ENSG00000254306; RP11-150O12.4; ENSG00000254306.1; OTTHUMG00000163999.1; AC137579.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.3832 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRF2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-150O12.3.1-1:1
3.1 lnc-RP11-150O12.3.1-2:1
4.0 lnc-RP11-150O12.3.1-2:1
4.1 lnc-RP11-150O12.3.1-2:1
5.0 lnc-RP11-150O12.3.1-2:1
5.1 lnc-C8orf86-45:1
5.2 lnc-BRF2-6:1