Transcript: lnc-C15orf48-4:8

Basic information

LNCipedia transcript ID: lnc-C15orf48-4:8 
LNCipedia gene ID: lnc-C15orf48-4
Ensembl Gene ID: ENSG00000259354
Ensembl Transcript ID: ENST00000559960
Location (hg38): chr15:45459010-45460956
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559960.1; RP11-519G16.3-004; OTTHUMT00000416550.1; NONHSAT042256
Alternative gene names: ENSG00000259354.1; RP11-519G16.3; OTTHUMG00000172025.1; ENSG00000259354.5; AC025580.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.2357 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C15orf48-4:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C15orf48-1:6
4.0 lnc-C15orf48-1:6
4.1 lnc-C15orf48-1:6
5.0 lnc-C15orf48-1:6
5.1 lnc-CCNDBP1-140:8
5.2 lnc-C15orf48-4:8