Transcript: lnc-C4BPA-1:1

Basic information

LNCipedia transcript ID: lnc-C4BPA-1:1 
LNCipedia gene ID: lnc-C4BPA-1
Ensembl Gene ID: ENSG00000243636
Ensembl Transcript ID: ENST00000442684
Location (hg38): chr1:207179296-207184062
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 945 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442684.1; RP11-164O23.7-001; OTTHUMT00000088206.1
Alternative gene names: ENSG00000243636.1; RP11-164O23.7; OTTHUMG00000036253.1; AL445493.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.1224 non-coding 
CPAT coding probability 4.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C4BPA-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C4BPA-1:1
4.0 lnc-C4BPA-1:1
4.1 lnc-C4BPA-1:1
5.0 lnc-C4BPA-1:1
5.1 lnc-CDK18-39:1
5.2 lnc-C4BPA-1:1