Transcript: lnc-CACNA1B-1:1

Basic information

LNCipedia transcript ID: lnc-CACNA1B-1:1 
LNCipedia gene ID: lnc-CACNA1B-1
Location (hg38): chr9:138216187-138243722
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1278 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000540522.1; FAM157B-201; ENST00000540522.5
Alternative gene names: ENSG00000233013.3; FAM157B; OTTHUMG00000021000.1; ENSG00000233013.4; ENSG00000233013.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 129.2136 coding 
CPAT coding probability 99.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CACNA1B-1:1 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CACNA1B-1:1
4.0 lnc-CACNA1B-1:1
4.1 lnc-CACNA1B-1:1
5.0 lnc-CACNA1B-1:1
5.1 lnc-GPSM1-78:1
5.2 lnc-CACNA1B-1:1