Transcript: lnc-CACNA1B-1:3

Basic information

LNCipedia transcript ID: lnc-CACNA1B-1:3 
LNCipedia gene ID: lnc-CACNA1B-1
Location (hg38): chr9:138249271-138252157
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 730 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016238; NONHSAT135772
Alternative gene names: XLOC_007621;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.2354 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CACNA1B-1:3 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CACNA1B-1:1
3.1 lnc-CACNA1B-1:3
4.0 lnc-CACNA1B-1:3
4.1 lnc-CACNA1B-1:3
5.0 lnc-CACNA1B-1:3
5.1 lnc-GPSM1-78:4
5.2 lnc-CACNA1B-1:3