Transcript: lnc-CACNA1B-1:4

Basic information

LNCipedia transcript ID: lnc-CACNA1B-1:4 
LNCipedia gene ID: lnc-CACNA1B-1
Location (hg38): chr9:138217068-138252994
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1795 bp
Exons: 9
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT135771; ENST00000446912.2; ENST00000446912.3
Alternative gene names: ENSG00000233013.4; FAM157B; ENSG00000233013.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 125.0856 coding 
CPAT coding probability 60.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CACNA1B-1:4 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CACNA1B-1:4
4.0 lnc-CACNA1B-1:4
4.1 lnc-CACNA1B-1:4
5.0 lnc-CACNA1B-1:4
5.1 lnc-GPSM1-78:3
5.2 lnc-CACNA1B-1:4