Transcript: lnc-CALML5-5:1

Basic information

LNCipedia transcript ID: lnc-CALML5-5:1 
LNCipedia gene ID: lnc-CALML5-5
Location (hg38): chr10:5564804-5566717
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 684 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018421; NONHSAT011161
Alternative gene names: XLOC_008710; linc-CALML5-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -260.0591 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CALML5-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALML5-4:1
3.1 lnc-CALML5-5:1
4.0 lnc-CALML5-5:1
4.1 lnc-CALML5-5:1
5.0 lnc-CALML5-5:1
5.1 lnc-KLF6-53:1
5.2 lnc-CALML5-5:1