Transcript: lnc-CBX5-5:1

Basic information

LNCipedia transcript ID: lnc-CBX5-5:1 
LNCipedia gene ID: lnc-CBX5-5
Ensembl Gene ID: ENSG00000260470
Ensembl Transcript ID: ENST00000564380
Location (hg38): chr12:54145069-54147225
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2157 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564380.1; RP11-834C11.11-001; OTTHUMT00000421118.1; NONHSAT028583
Alternative gene names: ENSG00000260470.1; RP11-834C11.11; OTTHUMG00000172878.1; AC023794.5; AC023794.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7014 non-coding 
CPAT coding probability 21.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CBX5-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMUG1-2:1
4.0 lnc-SMUG1-2:1
4.1 lnc-SMUG1-2:1
5.0 lnc-SMUG1-2:1
5.1 lnc-PPP1R1A-15:1
5.2 lnc-CBX5-5:1