Transcript: lnc-CCT4-1:1

Basic information

LNCipedia transcript ID: lnc-CCT4-1:1 
LNCipedia gene ID: lnc-CCT4-1
Ensembl Gene ID: ENSG00000229839
Ensembl Transcript ID: ENST00000425966
Location (hg38): chr2:62069447-62146881
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1684 bp
Exons: 8
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425966.2; AC018462.2-001; OTTHUMT00000326542.3; NONHSAT070997; ENST00000425966.6
Alternative gene names: ENSG00000229839.2; AC018462.2; OTTHUMG00000152512.3; ENSG00000229839.6; AC018462.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.3398 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCT4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCT4-1:1
4.0 lnc-CCT4-1:1
4.1 lnc-CCT4-1:1
5.0 lnc-CCT4-1:1
5.1 lnc-PPP4R3B-103:6
5.2 lnc-CCT4-1:1