Transcript: lnc-CHRD-10:5

Basic information

LNCipedia transcript ID: lnc-CHRD-10:5 
LNCipedia gene ID: lnc-CHRD-10
Ensembl Gene ID: ENSG00000224153
Ensembl Transcript ID: ENST00000419960
Location (hg38): chr3:184401630-184439648
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 885 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419960.1
Alternative gene names: ENSG00000224153.2; RP11-433C9.2; LINC02054; ENSG00000224153.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -92.9157 non-coding 
CPAT coding probability 79.14% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CHRD-10:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-433C9.2.1-1:5
4.1 lnc-RP11-433C9.2.1-1:5
5.0 lnc-RP11-433C9.2.1-1:5
5.1 lnc-FAM131A-10:5
5.2 lnc-CHRD-10:5