Transcript: lnc-CLEC18B-3:5

Basic information

LNCipedia transcript ID: lnc-CLEC18B-3:5 ?
LNCipedia gene ID: lnc-CLEC18B-3
Location (hg19): chr16:74226291-74249420
Strand: -
Class: intergenic
Transcript size: 966 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000510251; TCONS_00024274; ENST00000568137.1; AC009120.4-001; OTTHUMT00000431686.1; NONHSAT143655; NR_104657
Alternative gene names: ENSG00000249447; XLOC_012007; linc-ZFHX3-2; ENSG00000261404.1; AC009120.4; OTTHUMG00000176255.2; ENSG00000261404.5


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 15.8679 non-coding ?
CPAT coding probability 0.54% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLEC18B-3:5 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -292.61
Randfold P-value: 0.086

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-4273 73.76
hsa-miR-4768-5p 66.37
hsa-miR-1236 65.82
hsa-miR-127-5p 64.56
hsa-miR-4646-3p 60.52
hsa-miR-3916 60.18
hsa-miR-1245b-3p 59.35
hsa-miR-3915 56.57
hsa-miR-518c-5p 55.75
hsa-miR-5680 55.75
hsa-miR-764 54.48
hsa-miR-302f 53.39
hsa-miR-186-3p 51.26
hsa-miR-3125 50.78
hsa-miR-4786-5p 50.00
hsa-miR-5003-5p 50.00

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-CLEC18B-2:3
4.0 lnc-CLEC18B-3:5
3.1 lnc-CLEC18B-3:5