Transcript: lnc-CPHXL-3:2

Basic information

LNCipedia transcript ID: lnc-CPHXL-3:2 
LNCipedia gene ID: lnc-CPHXL-3
Ensembl Gene ID: ENSG00000260223
Ensembl Transcript ID: ENST00000564561
Location (hg38): chr16:76107283-76147779
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 590 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564561.1; RP11-293N14.1-002; OTTHUMT00000435682.1; NONHSAT143771
Alternative gene names: ENSG00000260223.1; RP11-293N14.1; OTTHUMG00000177159.1; AC099511.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.8252 non-coding 
CPAT coding probability 13.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPHXL-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC025287.1-2:2
4.0 lnc-AC025287.1-2:2
4.1 lnc-AC025287.1-2:2
5.0 lnc-AC025287.1-2:2
5.1 lnc-MLKL-46:2
5.2 lnc-CPHXL-3:2