Transcript: lnc-CPO-3:1

Basic information

LNCipedia transcript ID: lnc-CPO-3:1 
LNCipedia gene ID: lnc-CPO-3
Ensembl Gene ID: ENSG00000224342
Ensembl Transcript ID: ENST00000435643
Location (hg38): chr2:207173634-207222790
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003085; ENST00000435643; ENST00000435643.1; AC007879.1-001; OTTHUMT00000336791.1; NONHSAT076581
Alternative gene names: XLOC_001824; linc-CREB1-3; ENSG00000224342; AC007879.1; ENSG00000224342.1; OTTHUMG00000154727.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -245.2934 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPO-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPO-3:1
3.1 lnc-CPO-3:1
4.0 lnc-CPO-3:1
4.1 lnc-CPO-3:1
5.0 lnc-CPO-3:1
5.1 lnc-CPS1-43:6
5.2 lnc-CPO-3:1