Transcript: lnc-CTU1-2:2

Basic information

LNCipedia transcript ID: lnc-CTU1-2:2 
LNCipedia gene ID: lnc-CTU1-2
Ensembl Gene ID: ENSG00000268595
Ensembl Transcript ID: ENST00000597569
Location (hg38): chr19:51251231-51271179
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 547 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT067425; ENST00000597569.1
Alternative gene names: ENSG00000268595.1; CTD-3187F8.2; AC063977.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.1739 non-coding 
CPAT coding probability 26.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTU1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSIG10L-1:2
4.0 lnc-CTU1-2:2
4.1 lnc-CTU1-2:2
5.0 lnc-CTU1-2:2
5.1 lnc-FAM71E1-35:2
5.2 lnc-CTU1-2:2