Transcript: lnc-CTU1-2:6

Basic information

LNCipedia transcript ID: lnc-CTU1-2:6 
LNCipedia gene ID: lnc-CTU1-2
Ensembl Gene ID: ENSG00000269072
Ensembl Transcript ID: ENST00000600074
RefSeq ID: NR_110732
Location (hg38): chr19:51152923-51181966
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1763 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT067413; ENST00000600074.1; NR_110732; NR_110732.1
Alternative gene names: ENSG00000269072.1; CTD-3187F8.14; AC063977.6; LOC101928517


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.2033 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTU1-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSIG10L-1:6
4.0 lnc-CTU1-2:6
4.1 lnc-CTU1-2:6
5.0 lnc-CTU1-2:6
5.1 lnc-FAM71E1-35:6
5.2 lnc-CTU1-2:6