Transcript: lnc-DEPP1-2:3

Basic information

LNCipedia transcript ID: lnc-DEPP1-2:3 
LNCipedia gene ID: lnc-DEPP1-2
Ensembl Gene ID: ENSG00000277757
Ensembl Transcript ID: ENST00000599308
Location (hg38): chr10:45016101-45147221
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 832 bp
Exons: 8
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT013063; ENST00000599308.3
Alternative gene names: ENSG00000277757.4; RP11-285G1.15; AL358394.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.9724 non-coding 
CPAT coding probability 47.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DEPP1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf25-2:4
4.0 lnc-C10orf25-2:4
4.1 lnc-C10orf25-2:4
5.0 lnc-C10orf25-2:4
5.1 lnc-LRRC18-74:3
5.2 lnc-DEPP1-2:3