Transcript: lnc-DEPP1-2:6

Basic information

LNCipedia transcript ID: lnc-DEPP1-2:6 
LNCipedia gene ID: lnc-DEPP1-2
Ensembl Gene ID: ENSG00000277757
Ensembl Transcript ID: ENST00000625472
Location (hg38): chr10:45016105-45146916
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 213 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625472.1
Alternative gene names: ENSG00000277757.4; RP11-285G1.15; AL358394.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -354.7861 non-coding 
CPAT coding probability 7.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEPP1-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C10orf25-2:20
4.1 lnc-C10orf25-2:20
5.0 lnc-C10orf25-2:20
5.1 lnc-LRRC18-74:6
5.2 lnc-DEPP1-2:6