Transcript: lnc-DLX4-2:1

Basic information

LNCipedia transcript ID: lnc-DLX4-2:1 
LNCipedia gene ID: lnc-DLX4-2
Ensembl Gene ID: ENSG00000254039
Ensembl Transcript ID: ENST00000518420
Location (hg38): chr17:49914403-49932918
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 395 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518420; ENST00000518420.1; RP11-304F15.6-001; OTTHUMT00000376579.1; NONHSAT054570
Alternative gene names: ENSG00000254039; RP11-304F15.6; ENSG00000254039.1; OTTHUMG00000163965.1; AC027801.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.9574 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DLX4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DLX4-2:1
3.1 lnc-DLX4-2:1
4.0 lnc-DLX4-2:1
4.1 lnc-DLX4-2:1
5.0 lnc-DLX4-2:1
5.1 lnc-ACSF2-24:1
5.2 lnc-DLX4-2:1