Transcript: lnc-EPG5-9:3

Basic information

LNCipedia transcript ID: lnc-EPG5-9:3 
LNCipedia gene ID: lnc-EPG5-9
Ensembl Gene ID: ENSG00000267101
Ensembl Transcript ID: ENST00000587276
Location (hg38): chr18:45168600-45181114
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059101; ENST00000587276.1
Alternative gene names: ENSG00000267101.1; RP11-846C15.2; ENSG00000267101.5; AC090376.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -408.3427 non-coding 
CPAT coding probability 2.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPG5-9:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EPG5-9:3
4.0 lnc-EPG5-9:3
4.1 lnc-EPG5-9:3
5.0 lnc-EPG5-9:3
5.1 lnc-SMAD2-36:3
5.2 lnc-EPG5-9:3