Transcript: lnc-EPS8L3-1:1

Basic information

LNCipedia transcript ID: lnc-EPS8L3-1:1 
LNCipedia gene ID: lnc-EPS8L3-1
Ensembl Gene ID: ENSG00000235005
Ensembl Transcript ID: ENST00000415166
Location (hg38): chr1:109884176-109886264
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 450 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000600; ENST00000415166.1; RP11-195M16.1-001; OTTHUMT00000032186.1; NONHSAT005074
Alternative gene names: XLOC_000955; linc-EPS8L3; ENSG00000235005.1; RP11-195M16.1; OTTHUMG00000011641.1; AL450468.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.9086 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPS8L3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EPS8L3-1:1
3.1 lnc-EPS8L3-1:1
4.0 lnc-EPS8L3-1:1
4.1 lnc-EPS8L3-1:1
5.0 lnc-EPS8L3-1:1
5.1 lnc-LAMTOR5-10:1
5.2 lnc-EPS8L3-1:1