Transcript: lnc-ETNK1-1:1

Basic information

LNCipedia transcript ID: lnc-ETNK1-1:1 
LNCipedia gene ID: lnc-ETNK1-1
Ensembl Gene ID: ENSG00000250166
Ensembl Transcript ID: ENST00000508615
Location (hg38): chr12:22601425-22618867
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508615; ENST00000508615.2; RP11-268P4.5-001; OTTHUMT00000402051.1; NONHSAT027284
Alternative gene names: ENSG00000250166; RP11-268P4.5; ENSG00000250166.2; OTTHUMG00000169038.1; AC087241.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.0216 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ETNK1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ETNK1-1:1
3.1 lnc-ETNK1-1:1
4.0 lnc-ETNK1-1:1
4.1 lnc-ETNK1-1:1
5.0 lnc-ETNK1-1:1
5.1 lnc-KIAA1551-109:8
5.2 lnc-ETNK1-1:1