Transcript: lnc-F13A1-3:11

Basic information

LNCipedia transcript ID: lnc-F13A1-3:11 
LNCipedia gene ID: lnc-F13A1-3
Ensembl Gene ID: ENSG00000226281
Ensembl Transcript ID: ENST00000432823
Location (hg38): chr6:6692744-6711002
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 568 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT107557; ENST00000432823.2
Alternative gene names: ENSG00000226281.2; RP1-80N2.2; AL031123.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.1446 non-coding 
CPAT coding probability 3.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F13A1-3:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-F13A1-3:11
4.0 lnc-F13A1-3:11
4.1 lnc-F13A1-3:11
5.0 lnc-F13A1-3:11
5.1 lnc-ECI2-161:18
5.2 lnc-F13A1-3:11