Transcript: lnc-F13A1-3:8

Basic information

LNCipedia transcript ID: lnc-F13A1-3:8 
LNCipedia gene ID: lnc-F13A1-3
Location (hg38): chr6:6694794-6700487
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2641 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000512967; TCONS_00011442
Alternative gene names: ENSG00000248940; XLOC_005595; linc-F13A1-1; AL031123.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.8003 non-coding 
CPAT coding probability 7.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F13A1-3:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-F13A1-1:8
3.1 lnc-F13A1-3:8
4.0 lnc-F13A1-3:8
4.1 lnc-F13A1-3:8
5.0 lnc-F13A1-3:8
5.1 lnc-ECI2-161:24
5.2 lnc-F13A1-3:8