Transcript: lnc-FAM171B-1:1

Basic information

LNCipedia transcript ID: lnc-FAM171B-1:1 
LNCipedia gene ID: lnc-FAM171B-1
Ensembl Gene ID: ENSG00000224063
Ensembl Transcript ID: ENST00000453517
Location (hg38): chr2:187003220-187527280
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 802 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453517.1; AC007319.1-001; OTTHUMT00000334574.1; NONHSAT076007; ENST00000453517.5
Alternative gene names: ENSG00000224063.1; AC007319.1; OTTHUMG00000154263.2; ENSG00000224063.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.1204 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM171B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM171B-1:1
4.0 lnc-FAM171B-1:1
4.1 lnc-FAM171B-1:1
5.0 lnc-FAM171B-1:1
5.1 lnc-FAM171B-1:1
5.2 lnc-FAM171B-1:1