Transcript: lnc-FBXO31-12:6

Basic information

LNCipedia transcript ID: lnc-FBXO31-12:6 
LNCipedia gene ID: lnc-FBXO31-12
Ensembl Gene ID: ENSG00000261697
Ensembl Transcript ID: ENST00000561709
Location (hg38): chr16:87271907-87292409
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 660 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561709.1; RP11-178L8.5-003; OTTHUMT00000430796.1; NONHSAT144262
Alternative gene names: ENSG00000261697.1; RP11-178L8.5; OTTHUMG00000175683.1; ENSG00000261697.5; AC010531.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.323 non-coding 
CPAT coding probability 2.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXO31-12:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf95-1:5
4.0 lnc-C16orf95-1:5
4.1 lnc-C16orf95-1:5
5.0 lnc-C16orf95-1:5
5.1 lnc-FBXO31-7:6
5.2 lnc-FBXO31-12:6