Transcript: lnc-FNDC1-3:1

Basic information

LNCipedia transcript ID: lnc-FNDC1-3:1 
LNCipedia gene ID: lnc-FNDC1-3
Location (hg38): chr6:159107306-159115503
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012005; NONHSAT115831
Alternative gene names: XLOC_005520; linc-FNDC1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.1708 non-coding 
CPAT coding probability 14.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FNDC1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FNDC1-3:1
3.1 lnc-FNDC1-3:1
4.0 lnc-FNDC1-3:1
4.1 lnc-FNDC1-3:1
5.0 lnc-FNDC1-3:1
5.1 lnc-SYTL3-6:2
5.2 lnc-FNDC1-3:1