Transcript: lnc-FNDC1-3:2

Basic information

LNCipedia transcript ID: lnc-FNDC1-3:2 
LNCipedia gene ID: lnc-FNDC1-3
Ensembl Gene ID: ENSG00000224478
Ensembl Transcript ID: ENST00000421161
Location (hg38): chr6:159107791-159116053
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 845 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011402; ENST00000421161; ENST00000421161.1; RP11-13P5.1-001; OTTHUMT00000042895.1; NONHSAT115832
Alternative gene names: XLOC_005520; linc-FNDC1-3; ENSG00000224478; RP11-13P5.1; ENSG00000224478.1; OTTHUMG00000015925.1; AL356417.1; ENSG00000224478.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.1334 non-coding 
CPAT coding probability 16.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FNDC1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FNDC1-3:2
3.1 lnc-FNDC1-3:2
4.0 lnc-FNDC1-3:2
4.1 lnc-FNDC1-3:2
5.0 lnc-FNDC1-3:2
5.1 lnc-SYTL3-6:3
5.2 lnc-FNDC1-3:2